Statistics Summary Report for MSGP Center

Last updated: Feb 2 2012

Target Status Statistics

Table 1: Status Statistics for MSGP
Table 2: Status Statistics for MSGP by Organisms

Sequence Redundancy Statistics

Table 3: Sequence Redundancy Statistics for MSGP by Experimental Status

Target Status Statistics

Total number of targets deposited by MSGP to TargetDB: 325

View MSGP Target List

Table 1: Status Statistics for MSGP

Status	Total Number of Targets	(%) Relative to "Cloned" Targets	(%) Relative to "Expressed" Targets	(%) Relative to "Purified" Targets	(%) Relative to "Crystallized" Targets
Cloned	279	100.0	-	-	-
Expressed	175	62.7	100.0	-	-
Soluble	91	32.6	52.0	-	-
Purified	59	21.1	33.7	100.0	-
Crystallized	38	13.6	21.7	64.4	100.0
Diffraction-quality Crystals	16	5.7	9.1	27.1	42.1
Diffraction	14	5.0	8.0	23.7	36.8
NMR Assigned	0	0.0	0.0	0.0	-
HSQC	0	0.0	0.0	0.0	-
Crystal Structure	8	2.9	4.6	13.6	21.1
NMR Structure	0	0.0	0.0	0.0	-
In PDB1	0	0.0	0.0	0.0	0
Work Stopped	4	-	-	-	-
Test Target	0	-	-	-	-
Other	0	-	-	-	-

Last updated: Feb 2 2012

Note 1: Number of targets with status "in PDB" may not be equal to number of structures determined by a project. A target may reference several PDB IDs (example: structure of the same polypeptides with different ligands). Multiple targets in TargetDB may identify the same PDB structure when a stucture is a result of collaboration between different centers and each center includes the target on its target list.

Table 2: Status Statistics for MSGP by Organism

These statistics are derived from mapping of target sequences to GenBank using >=98% sequence identity cut off.

Organism	Total Number1	Work Stopped	Cloned	Expressed	Purified	Crystallized	Crystal Structure	NMR Structure	In PDB
Viruses	22	0	20	9	1	0	0	0	0
Bacteria	289	4	248	157	56	38	8	0	0
Prokaryota	289	4	248	157	56	38	8	0	0
Arabidopsis	1	0	1	1	1	1	0	0	0
Eukaryota	9	0	9	9	3	2	1	0	0
Uncultured or unidentified	1	0	1	1	1	1	0	0	0

Last updated: Feb 2 2012

Note 1: Total counts in this table may differ from total number of targets and structures. A target is counted in different organism specifications if:
- a target is mapped to different organisms
- a target is a hybrid complex (for example:a complex of human and mouse polypeptides).

Sequence Redundancy Statistics

Table 3: Sequence Redundancy Statistics for MSGP by Experimental Status

Sequence Identity(%)	Novel Targets Status: Selected	Novel Targets Status: Cloned	Novel Targets Status: Expressed	Novel Targets Status: Purified	Novel Targets Status: Crystallized	Novel Targets Status: Crystal Structure	Novel Targets Status: in PDB
<100	324	279	175	59	38	8	0
<98	324	278	175	59	38	8	0
<95	321	276	174	59	38	8	0
<90	321	276	174	59	38	8	0
<70	320	275	174	59	38	8	0
<50	297	258	166	59	38	8	0
<40	278	246	160	58	38	8	0
<30	180	182	123	53	35	8	0

Last updated: 12-01-10

Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity. Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings. Sequence redundancy calculations are based on comparison to all protein sequences in TargetDB which are in the same experimental status category and at least 20 amino acids long.