PSI TargetDB

Statistics Summary Report for ISFI Center

Last updated: Feb 2 2012



Target Status Statistics

Total number of targets deposited by ISFI to TargetDB: 425

      View ISFI Target List

Table 1: Status Statistics for ISFI

Status Total Number of Targets(%) Relative to "Cloned" Targets(%) Relative to "Expressed" Targets(%) Relative to "Purified" Targets(%) Relative to "Crystallized" Targets
Cloned329100.0---
Expressed24373.9100.0--
Soluble21364.787.7--
Purified20963.586.0100.0-
Crystallized17452.971.683.3100.0
Diffraction-quality Crystals15848.065.075.690.8
Diffraction15346.563.073.287.9
NMR Assigned00.00.00.0-
HSQC00.00.00.0-
Crystal Structure15145.962.172.286.8
NMR Structure00.00.00.0-
In PDB112838.952.761.274
Work Stopped102----
Test Target3----
Other0----

Last updated: Feb 2 2012


Note 1:   Number of targets with status "in PDB" may not be equal to number of structures determined by a project. A target may reference several PDB IDs (example: structure of the same polypeptides with different ligands). Multiple targets in TargetDB may identify the same PDB structure when a stucture is a result of collaboration between different centers and each center includes the target on its target list.

Table 2: Status Statistics for ISFI by Organism

These statistics are derived from mapping of target sequences to GenBank using >=98% sequence identity cut off.


Organism Total Number1 Work Stopped Cloned Expressed Purified Crystallized Crystal Structure NMR Structure In PDB
Archaea402000000
Bacteria4071023162382061741510128
Prokaryota4111023182382061741510128
Yeast909420000
Human200000000
Eukaryota1209420000

Last updated: Feb 2 2012

Note 1:   Total counts in this table may differ from total number of targets and structures. A target is counted in different organism specifications if:
- a target is mapped to different organisms
- a target is a hybrid complex (for example:a complex of human and mouse polypeptides).

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Deposited Structure Statistics for ISFI Center

Number of Released X-Ray Structures: 12

Number of Released NMR Structures: 1

Total number of released structures from ISFI center in the PDB: 13

Table 3: PDB Status Statistics for Structures from ISFI

PDB StatusNumber of Structures
Total Deposited124
Released13
In Process111
Last updated: Feb 2 2012
Note 1:   "Total Deposited" are all structures in the PDB including structures released to the public and structures that are in the process to be released ("Released on Publication" , "Released on Certain Date", etc.).

Table 4: List of Structures Deposited in the PDB by ISFI

Total number of structures: 124

Structures of distinct targets: 1241

1   A target may reference several PDB IDs (example: structure of the same polypeptides with different ligands).
In this case only one structure is counted to compute number of structures of distinct targets.

Related PDB_ID(s): PDB_ID(s) associated with the same target in TargetDB.

PDB_ID TitleTarget_id Deposition DateReleased Date PDB StatusRelated PDB_ID in TargetDB
ND_30 Experimental status "in PDB", PDB ID is not providedISFI98---none
ND_93 Experimental status "in PDB", PDB ID is not providedISFI495---none
ND_15 Experimental status "in PDB", PDB ID is not providedISFI83---none
ND_44 Experimental status "in PDB", PDB ID is not providedISFI112---none
ND_72 Experimental status "in PDB", PDB ID is not providedISFI144---none
ND_33 Experimental status "in PDB", PDB ID is not providedISFI101---none
ND_4 Experimental status "in PDB", PDB ID is not providedISFI47---none
ND_17 Experimental status "in PDB", PDB ID is not providedISFI85---none
ND_99 Experimental status "in PDB", PDB ID is not providedISFI411---none
ND_20 Experimental status "in PDB", PDB ID is not providedISFI88---none
ND_84 Experimental status "in PDB", PDB ID is not providedISFI1103---none
ND_47 Experimental status "in PDB", PDB ID is not providedISFI115---none
ND_101 Experimental status "in PDB", PDB ID is not providedISFI508---none
ND_58 Experimental status "in PDB", PDB ID is not providedISFI128---none
ND_49 Experimental status "in PDB", PDB ID is not providedISFI117---none
ND_74 Experimental status "in PDB", PDB ID is not providedISFI146---none
ND_95 Experimental status "in PDB", PDB ID is not providedISFI497---none
ND_6 Experimental status "in PDB", PDB ID is not providedISFI74---none
ND_75 Experimental status "in PDB", PDB ID is not providedISFI147---none
ND_59 Experimental status "in PDB", PDB ID is not providedISFI129---none
ND_104 Experimental status "in PDB", PDB ID is not providedISFI519---none
ND_13 Experimental status "in PDB", PDB ID is not providedISFI81---none
ND_82 Experimental status "in PDB", PDB ID is not providedISFI418---none
ND_106 Experimental status "in PDB", PDB ID is not providedISFI425---none
ND_112 Experimental status "in PDB", PDB ID is not providedISFI1211---none
ND_68 Experimental status "in PDB", PDB ID is not providedISFI322---none
ND_39 Experimental status "in PDB", PDB ID is not providedISFI107---none
ND_22 Experimental status "in PDB", PDB ID is not providedISFI90---none
ND_24 Experimental status "in PDB", PDB ID is not providedISFI92---none
ND_11 Experimental status "in PDB", PDB ID is not providedISFI79---none
ND_105 Experimental status "in PDB", PDB ID is not providedISFI520---none
ND_7 Experimental status "in PDB", PDB ID is not providedISFI75---none
ND_96 Experimental status "in PDB", PDB ID is not providedISFI498---none
ND_18 Experimental status "in PDB", PDB ID is not providedISFI86---none
ND_52 Experimental status "in PDB", PDB ID is not providedISFI122---none
ND_62 Experimental status "in PDB", PDB ID is not providedISFI133---none
ND_9 Experimental status "in PDB", PDB ID is not providedISFI77---none
ND_63 Experimental status "in PDB", PDB ID is not providedISFI135---none
ND_88 Experimental status "in PDB", PDB ID is not providedISFI397---none
ND_77 Experimental status "in PDB", PDB ID is not providedISFI202---none
ND_35 Experimental status "in PDB", PDB ID is not providedISFI103---none
ND_55 Experimental status "in PDB", PDB ID is not providedISFI125---none
ND_16 Experimental status "in PDB", PDB ID is not providedISFI84---none
ND_70 Experimental status "in PDB", PDB ID is not providedISFI140---none
ND_26 Experimental status "in PDB", PDB ID is not providedISFI94---none
ND_42 Experimental status "in PDB", PDB ID is not providedISFI110---none
ND_91 Experimental status "in PDB", PDB ID is not providedISFI492---none
ND_108 Experimental status "in PDB", PDB ID is not providedISFI430---none
ND_98 Experimental status "in PDB", PDB ID is not providedISFI410---none
ND_54 Experimental status "in PDB", PDB ID is not providedISFI124---none
ND_65 Experimental status "in PDB", PDB ID is not providedISFI137---none
ND_2 Experimental status "in PDB", PDB ID is not providedISFI45---none
ND_86 Experimental status "in PDB", PDB ID is not providedISFI393---none
ND_81 Experimental status "in PDB", PDB ID is not providedISFI242---none
ND_3 Experimental status "in PDB", PDB ID is not providedISFI46---none
ND_102 Experimental status "in PDB", PDB ID is not providedISFI516---none
ND_67 Experimental status "in PDB", PDB ID is not providedISFI139---none
ND_21 Experimental status "in PDB", PDB ID is not providedISFI89---none
ND_28 Experimental status "in PDB", PDB ID is not providedISFI96---none
ND_92 Experimental status "in PDB", PDB ID is not providedISFI493---none
ND_57 Experimental status "in PDB", PDB ID is not providedISFI127---none
ND_23 Experimental status "in PDB", PDB ID is not providedISFI91---none
ND_5 Experimental status "in PDB", PDB ID is not providedISFI73---none
ND_46 Experimental status "in PDB", PDB ID is not providedISFI114---none
ND_14 Experimental status "in PDB", PDB ID is not providedISFI82---none
ND_107 Experimental status "in PDB", PDB ID is not providedISFI426---none
ND_71 Experimental status "in PDB", PDB ID is not providedISFI143---none
ND_110 Experimental status "in PDB", PDB ID is not providedISFI734---none
ND_103 Experimental status "in PDB", PDB ID is not providedISFI422---none
ND_50 Experimental status "in PDB", PDB ID is not providedISFI118---none
ND_38 Experimental status "in PDB", PDB ID is not providedISFI106---none
ND_83 Experimental status "in PDB", PDB ID is not providedISFI329---none
ND_31 Experimental status "in PDB", PDB ID is not providedISFI99---none
ND_69 Experimental status "in PDB", PDB ID is not providedISFI323---none
ND_60 Experimental status "in PDB", PDB ID is not providedISFI131---none
ND_36 Experimental status "in PDB", PDB ID is not providedISFI104---none
ND_94 Experimental status "in PDB", PDB ID is not providedISFI496---none
ND_48 Experimental status "in PDB", PDB ID is not providedISFI116---none
ND_25 Experimental status "in PDB", PDB ID is not providedISFI93---none
ND_41 Experimental status "in PDB", PDB ID is not providedISFI109---none
ND_85 Experimental status "in PDB", PDB ID is not providedISFI1104---none
ND_109 Experimental status "in PDB", PDB ID is not providedISFI704---none
ND_12 Experimental status "in PDB", PDB ID is not providedISFI80---none
ND_73 Experimental status "in PDB", PDB ID is not providedISFI145---none
ND_64 Experimental status "in PDB", PDB ID is not providedISFI136---none
ND_51 Experimental status "in PDB", PDB ID is not providedISFI119---none
ND_40 Experimental status "in PDB", PDB ID is not providedISFI108---none
ND_37 Experimental status "in PDB", PDB ID is not providedISFI105---none
ND_78 Experimental status "in PDB", PDB ID is not providedISFI203---none
ND_80 Experimental status "in PDB", PDB ID is not providedISFI240---none
ND_111 Experimental status "in PDB", PDB ID is not providedISFI735---none
ND_89 Experimental status "in PDB", PDB ID is not providedISFI490---none
ND_10 Experimental status "in PDB", PDB ID is not providedISFI78---none
ND_43 Experimental status "in PDB", PDB ID is not providedISFI111---none
ND_34 Experimental status "in PDB", PDB ID is not providedISFI102---none
ND_76 Experimental status "in PDB", PDB ID is not providedISFI148---none
ND_61 Experimental status "in PDB", PDB ID is not providedISFI132---none
ND_27 Experimental status "in PDB", PDB ID is not providedISFI95---none
ND_8 Experimental status "in PDB", PDB ID is not providedISFI76---none
ND_87 Experimental status "in PDB", PDB ID is not providedISFI394---none
ND_100 Experimental status "in PDB", PDB ID is not providedISFI412---none
ND_53 Experimental status "in PDB", PDB ID is not providedISFI123---none
ND_66 Experimental status "in PDB", PDB ID is not providedISFI138---none
ND_79 Experimental status "in PDB", PDB ID is not providedISFI204---none
ND_56 Experimental status "in PDB", PDB ID is not providedISFI126---none
ND_97 Experimental status "in PDB", PDB ID is not providedISFI502---none
ND_32 Experimental status "in PDB", PDB ID is not providedISFI100---none
ND_45 Experimental status "in PDB", PDB ID is not providedISFI113---none
ND_19 Experimental status "in PDB", PDB ID is not providedISFI87---none
ND_90 Experimental status "in PDB", PDB ID is not providedISFI491---none
ND_29 Experimental status "in PDB", PDB ID is not providedISFI97---none
3G5O the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2866) from mycobacterium tuberculosisISFI120 ISFI:ISFI121 TB:Rv28662009-02-052009-04-14RELnone
2G2D crystal structure of a putative pduo-type atp:cobalamin adenosyltransferase from mycobacterium tuberculosisISFI15 TB:Rv1314c2006-02-152006-03-28RELnone
3H87 rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosisISFI521 ISFI:ISFI522 TB:Rv03012009-04-282009-05-05RELnone
3DBO crystal structure of a member of the vapbc family of toxin-antitoxin systems, vapbc-5, from mycobacterium tuberculosisISFI449 ISFI:ISFI450 TB:Rv06272008-06-022008-07-15RELnone
3H3E crystal structure of tm1679, a metal-dependent hydrolase of the beta-lactamase superfamilyISFI3372009-04-162009-07-14RELnone
2NYX crystal structure of rv1404 from mycobacterium tuberculosisISFI155 TB:Rv1404 TB:rv14042006-11-212006-12-05RELnone
3E57 crystal structure of tm1382, a putative nudix hydrolaseISFI3382008-08-132008-09-30RELnone
2G38 a pe/ppe protein complex from mycobacterium tuberculosisISFI141 ISFI:ISFI142 TB:rv2430c TB:Rv2431c2006-02-172006-03-14RELnone
3FHK crystal structure of apc1446, b.subtilis yphp disulfide isomeraseISFI3082008-12-092009-09-01RELnone
2IB0 crystal structure of a conserved hypothetical protein, rv2844, from mycobacterium tuberculosisISFI195 TB:Rv28442006-09-082006-09-26RELnone
3FMS crystal structure of tm0439, a gntr transcriptional regulatorISFI3322008-06-022008-07-01RELnone
2JPB solution structure of ompr-c dna binding proteinISFI3332007-05-032007-06-12RELnone
3E4X crystal structure of putative metal-dependent hydrolases apc36150ISFI1542008-08-122008-10-14Replaced by:3GORnone

Last updated: Feb 2 2012

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Sequence Redundancy Statistics

Table 5: Sequence Redundancy Statistics for ISFI by Experimental Status

Sequence Identity(%)Novel Targets
Status:
Selected		 Novel Targets
Status:
Cloned		 Novel Targets
Status:
Expressed 		Novel Targets
Status:
Purified		 Novel Targets
Status:
Crystallized		 Novel Targets
Status:
Crystal Structure		Novel Targets
Status:
in PDB
<10036828119716813811597
<9836628019616713711496
<9536527819416513511294
<9036327719316413411193
<7035827318916013110890
<5035126718715813010890
<4032525618015312710587
<3023721415314311810082
Last updated: 12-01-10
Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity.   Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings.  Sequence redundancy calculations are based on comparison to all protein sequences in TargetDB which are in the same experimental status category and at least 20 amino acids long.

Table 6: Sequence Redundancy Statistics for Structures Released by ISFI by Year

Year Released Structures Number of Released Structures <30% Identity at Time of Release Percent(%) of Released Structures <30% Identity(%) at Time of Release
20064375
2007100
20084375
20094375
Total13969
Last updated: 12-02-02
Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity.   Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings.  Sequence redundancy calculations are based on comparison to all protein sequences in the PDB which are at least 20 amino acids long.
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