Statistics Summary Report for CHTSB Center
Last updated: Feb 2 2012
Target Status Statistics
Total number of targets deposited by CHTSB to TargetDB: 129
View CHTSB Target ListTable 1: Status Statistics for CHTSB
| Status | Total Number of Targets | (%) Relative to "Cloned" Targets | (%) Relative to "Expressed" Targets | (%) Relative to "Purified" Targets | (%) Relative to "Crystallized" Targets |
| Cloned | 129 | 100.0 | - | - | - |
| Expressed | 34 | 26.4 | 100.0 | - | - |
| Soluble | 16 | 12.4 | 47.1 | - | - |
| Purified | 16 | 12.4 | 47.1 | 100.0 | - |
| Crystallized | 7 | 5.4 | 20.6 | 43.8 | 100.0 |
| Diffraction-quality Crystals | 5 | 3.9 | 14.7 | 31.2 | 71.4 |
| Diffraction | 5 | 3.9 | 14.7 | 31.2 | 71.4 |
| NMR Assigned | 0 | 0.0 | 0.0 | 0.0 | - |
| HSQC | 0 | 0.0 | 0.0 | 0.0 | - |
| Crystal Structure | 5 | 3.9 | 14.7 | 31.2 | 71.4 |
| NMR Structure | 0 | 0.0 | 0.0 | 0.0 | - |
| In PDB1 | 5 | 3.9 | 14.7 | 31.2 | 71 |
| Work Stopped | 40 | - | - | - | - |
| Test Target | 0 | - | - | - | - |
| Other | 0 | - | - | - | - |
Last updated: Feb 2 2012
Note 1: Number of targets with status "in PDB" may not be equal to number of structures determined by a project. A target may reference several PDB IDs (example: structure of the same polypeptides with different ligands). Multiple targets in TargetDB may identify the same PDB structure when a stucture is a result of collaboration between different centers and each center includes the target on its target list.
Table 2: Status Statistics for CHTSB by Organism
These statistics are derived from mapping of target sequences to GenBank using >=98% sequence identity cut off.
| Organism | Total Number1 | Work Stopped | Cloned | Expressed | Purified | Crystallized | Crystal Structure | NMR Structure | In PDB |
| Yeast | 125 | 40 | 125 | 30 | 12 | 3 | 1 | 0 | 1 |
| Eukaryota | 129 | 40 | 129 | 34 | 16 | 7 | 5 | 0 | 5 |
| Uncultured or unidentified | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Last updated: Feb 2 2012
Note 1:
Total counts in this table may differ from total number of targets and structures.
A target is counted in different organism specifications if:
- a target is mapped to different organisms
- a target is a hybrid complex (for example:a complex of human and mouse polypeptides).
Deposited Structure Statistics for CHTSB Center
Number of Released X-Ray Structures: 13
Number of Released NMR Structures: 3
Total number of released structures from CHTSB center in the PDB: 16
Table 3: PDB Status Statistics for Structures from CHTSB
| PDB Status | Number of Structures |
| Total Deposited | 16 |
| Released | 16 |
| In Process | 0 |
| Last updated: Feb 2 2012 |
| Note 1: "Total Deposited" are all structures in the PDB including structures released to the public and structures that are in the process to be released ("Released on Publication" , "Released on Certain Date", etc.). |
Table 4: List of Structures Deposited in the PDB by CHTSB
Total number of structures: 16
Structures of distinct targets: 161
1
A target may reference several PDB IDs
(example: structure of the same polypeptides with different ligands).
In this case only one structure is counted to compute number of structures of
distinct targets.
Related PDB_ID(s): PDB_ID(s) associated with the same target in TargetDB.
| PDB_ID | Title | Target_id | Deposition Date | Released Date | PDB Status | Related PDB_ID in TargetDB |
| 2VDU | structure of trm8, m7g methylation enzyme | CX00031 | 2007-10-11 | 2007-12-18 | REL | none |
| 1AYZ | crystal structure of the saccharomyces cerevisiae ubiquitin-conjugating enzyme rad6 (ubc2) at 2.6a resolution | CX00029 | 1997-11-12 | 1998-08-26 | REL | none |
| 3JW1 | crystal structure of bovine pancreatic ribonuclease complexed with uridine-5'-monophosphate at 1.60 a resolution | TAR3JW1 | 2009-09-17 | 2009-10-06 | REL | none |
| 2QCA | a new crystal form of bovine pancreatic rnase a in complex with 2'-deoxyguanosine-5'-monophosphate | TAR2QCA | 2007-06-19 | 2007-07-03 | REL | none |
| 3DYB | proteinase k- digalacturonic acid complex | TAR3DYB | 2008-07-25 | 2008-10-07 | REL | none |
| 3ENJ | structure of pig heart citrate synthase at 1.78 a resolution | TAR3ENJ | 2008-09-25 | 2009-02-03 | REL | none |
| 2J6A | crystal structure of s. cerevisiae ynr046w, a zinc finger protein from the erf1 methyltransferase complex. | CX00045 CHTSB:CX00046 CHTSB:CX00048 CHTSB:CX00050 | 2006-09-27 | 2006-09-28 | REL | none |
| 1Q67 | crystal structure of dcp1p | CX00009 | 2003-08-12 | 2004-03-02 | REL | none |
| 2AXQ | apo histidine-tagged saccharopine dehydrogenase (l-glu forming) from saccharomyces cerevisiae | CX00047 CHTSB:CX00049 CHTSB:CX00051 | 2005-09-05 | 2006-08-15 | REL | none |
| 1HV2 | solution structure of yeast elongin c in complex with a von hippel-lindau peptide | CX00036 | 2001-01-05 | 2001-09-06 | REL | none |
| 2IP1 | crystal structure analysis of s. cerevisiae tryptophanyl trna synthetase | YOL097C | 2006-10-11 | 2007-06-26 | REL | none |
| 2FA4 | crystal structure of oxidized form from saccharomyces cerevisiae | CX00044 | 2005-12-06 | 2006-12-06 | REL | none |
| 3BTS | crystal structure of a ternary complex of the transcriptional repressor gal80p (gal80s0 [g301r]) and the acidic activation domain of gal4p (aa 854-874) from saccharomyces cerevisiae with nad | CX00015 CHTSB:CX00016 | 2007-12-30 | 2008-03-04 | REL | none |
| 2I9H | nmr solution structure of the reduced form of thioredoxin 1 from yeast (trx1) | CX00043 | 2006-09-05 | 2007-07-17 | REL | none |
| 1YOP | the solution structure of kti11p | CX00033 CHTSB:CX00034 | 2005-01-28 | 2005-04-05 | REL | none |
| 1BOB | histone acetyltransferase hat1 from saccharomyces cerevisiae in complex with acetyl coenzyme a | CX00021 | 1998-07-02 | 1999-04-20 | REL | none |
Last updated: Feb 2 2012
back to topSequence Redundancy Statistics
Table 5: Sequence Redundancy Statistics for CHTSB by Experimental Status
| Sequence Identity(%) | Novel Targets
Status: Selected |
Novel Targets Status: Cloned |
Novel Targets Status: Expressed |
Novel Targets Status: Purified |
Novel Targets Status: Crystallized |
Novel Targets Status: Crystal Structure | Novel Targets Status: in PDB |
| <100 | 167 | 167 | 38 | 20 | 6 | 4 | 4 |
| <98 | 167 | 167 | 38 | 20 | 6 | 4 | 4 |
| <95 | 167 | 167 | 38 | 20 | 6 | 4 | 4 |
| <90 | 167 | 167 | 38 | 20 | 6 | 4 | 4 |
| <70 | 164 | 164 | 37 | 20 | 6 | 4 | 4 |
| <50 | 161 | 161 | 37 | 20 | 6 | 4 | 4 |
| <40 | 155 | 159 | 37 | 20 | 6 | 4 | 4 |
| <30 | 110 | 126 | 35 | 20 | 6 | 4 | 4 |
| Last updated: 12-01-10 |
| Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity. Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings. Sequence redundancy calculations are based on comparison to all protein sequences in TargetDB which are in the same experimental status category and at least 20 amino acids long. |
Table 6: Sequence Redundancy Statistics for Structures Released by CHTSB by Year
| Year | Released Structures | Number of Released Structures <30% Identity at Time of Release | Percent(%) of Released Structures <30% Identity(%) at Time of Release |
| 2001 | 1 | 0 | 0 |
| 2004 | 1 | 1 | 100 |
| 2005 | 1 | 0 | 0 |
| 2006 | 3 | 1 | 33 |
| 2007 | 4 | 1 | 25 |
| 2008 | 2 | 1 | 50 |
| 2009 | 2 | 0 | 0 |
| Total | 16 | 5 | 31 |
| Last updated: 12-02-02 |
| Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity. Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings. Sequence redundancy calculations are based on comparison to all protein sequences in the PDB which are at least 20 amino acids long. |